NIH BTP Trainees' Pubs During PhD Training

NIH Trainees Publications

Trainees' Publications During Their PhD are Listed From Most Current to Oldest

2015 – 2016 NIH FELLOWS’ PUBLICATIONS DURING PhD

KARAN AGRAWAL (2015 – 2016 NIH Fellow) PI: John Newman
Agrawal K, Ebel JG, Bischoff K. A rapid screen for four corticosteroids in equine synovial fluid. J Anal Toxicol. 2014 Jun;38(5):272-9. doi: 10.1093/jat/bku030. Epub 2014 Apr 8. PubMed PMID: 24713534.

Agrawal K, Ebel JG, Altier C, Bischoff K. Identification of protoxins and a microbial basis for red maple (Acer rubrum) toxicosis in equines. J Vet Diagn Invest. 2013 Jan;25(1):112-9. doi: 10.1177/1040638712468588. Epub 2012 Dec 12. PubMed PMID: 23242665.

JASMINE CORBIN (2015-2016 NIH Fellow) PI: Karen McDonald
Jalali-Yazdi F, Corbin JM, Takahashi TT, Roberts RW. Robust, quantitative analysis of proteins using peptide immunoreagents, in vitro translation, and an ultrasensitive acoustic resonant sensor. Anal Chem. 2014 May 20;86(10):4715-22. doi: 10.1021/ac500084d. Epub 2014 May 2. PubMed PMID: 24749546; PubMed Central PMCID: PMC4030805.

ROSANNA KWOK (2015-2016 NIH Fellow) PI: Joanna Chiu
Kwok RS, Lam VH, Chiu JC. Understanding the role of chromatin remodeling in the regulation of circadian transcription in Drosophila. Fly (Austin). 2016 Feb 29:0. [Epub ahead of print] PubMed PMID: 26926115.

Kwok RS, Li YH, Lei AJ, Edery I, Chiu JC. The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila. PLoS Genet. 2015 Jul 1;11(7):e1005307. doi: 10.1371/journal.pgen.1005307. eCollection 2015 Jul. PubMed PMID: 26132408; PubMed Central PMCID: PMC4488936.

Chiu JC, Jiang X, Zhao L, Hamm CA, Cridland JM, Saelao P, Hamby KA, Lee EK, Kwok RS, Zhang G, Zalom FG, Walton VM, Begun DJ. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda). 2013 Dec 9;3(12):2257-71. doi: 10.1534/g3.113.008185. PubMed PMID: 24142924; PubMed Central PMCID: PMC3852387.

Hamby KA, Kwok RS, Zalom FG, Chiu JC. Integrating circadian activity and gene expression profiles to predict chronotoxicity of Drosophila suzukii response to insecticides. PLoS One. 2013 Jul 5;8(7):e68472. doi: 10.1371/journal.pone.0068472. Print 2013. PubMed PMID: 23861907; PubMed Central PMCID: PMC3702611.

NICOLE NOZZI (2014 – 2016 NIH Fellow) PI: Shota Atsumi
Nozzi NE, Atsumi S. Genome Engineering of the 2,3-Butanediol Biosynthetic Pathway for Tight Regulation in Cyanobacteria. ACS Synth Biol. 2015 Nov 20;4(11):1197-204. doi: 10.1021/acssynbio.5b00057. Epub 2015 May 19. PubMed PMID: 25974153.

Nozzi NE, Desai SH, Case AE, Atsumi S. Metabolic engineering for higher alcohol production. Metab Eng. 2014 Sep;25:174-82. doi: 10.1016/j.ymben.2014.07.007. Epub 2014 Jul 28. Review. PubMed PMID: 25080238.

Nozzi NE, Oliver JW, Atsumi S. Cyanobacteria as a Platform for Biofuel Production. Front Bioeng Biotechnol. 2013 Sep 26;1:7. eCollection 2013. Review. PubMed PMID: 25022311; PubMed Central PMCID: PMC4090892.

LINDA SU (2015-16 NIH Fellow) PI: Alex Nord
Sandberg M, Flandin P, Silberberg S, Su-Feher L, Price JD, Hu JS, Kim C, Visel A, Nord AS, Rubenstein JL. Transcriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons. Neuron. 2016 Sep 21;91(6):1260-1275. doi: 10.1016/j.neuron.2016.08.020. PubMed PMID: 27657450.

ANNA MARIE TUAZON (2014 – 2016 NIH Fellow) PI: Luis Carvajal-Carmona
Fejerman L, Ahmadiyeh N, Hu D, Huntsman S, Beckman KB, Caswell JL, Tsung K, John EM, Torres-Mejia G, Carvajal-Carmona L, Echeverry MM, Tuazon AM, Ramirez C; COLUMBUS Consortium, Gignoux CR, Eng C, Gonzalez-Burchard E, Henderson B, Le Marchand L, Kooperberg C, Hou L, Agalliu I, Kraft P, Lindström S, Perez-Stable EJ, Haiman CA, Ziv E. Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. Nat Commun. 2014 Oct 20;5:5260. doi: 10.1038/ncomms6260. PubMed PMID: 25327703; PubMed Central PMCID: PMC4204111.

SANA VAZIRI (2015-2016 NIH Fellow) PI: Sharon Aviran
Deng F, Ledda M, Vaziri S, Aviran S. Data-directed RNA secondary structure prediction using probabilistic modeling. RNA. 2016 Aug;22(8):1109-19. doi: 10.1261/rna.055756.115. Epub 2016 Jun 1. PubMed PMID: 27251549; PubMed Central PMCID: PMC4931104.
NIH Public Access Compliance: Complete. PMCID: PMC4931104
NIH Funding:

  • T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomocular Technology
  • R00 HG006860 - Methods for RNA structural analysis using computation and structure mapping exper

 

2014 – 2015 NIH FELLOWS’ PUBLICATIONS DURING PhD

JOHNATHON ANDERSON (2014 – 2015 NIH Fellow) PI: Jan Nolta
Fink KD, Deng P, Gutierrez J, Anderson JS, Torrest A, Komarla A, Kalomoiris S, Cary W, Anderson JD, Gruenloh W, Duffy A, Tempkin T, Annett G, Wheelock V, Segal DJ, Nolta JA. Allele-Specific Reduction of the Mutant Huntingtin Allele Using Transcription Activator-Like Effectors in Human Huntington's Disease Fibroblasts. Cell Transplant. 2016;25(4):677-86. doi: 10.3727/096368916X690863. Epub 2016 Feb 4. PubMed PMID: 26850319.

Anderson JD, Johansson HJ, Graham CS, Vesterlund M, Pham MT, Bramlett CS, Montgomery EN, Mellema MS, Bardini RL, Contreras Z, Hoon M, Bauer G, Fink KD, Fury B, Hendrix KJ, Chedin F, El-Andaloussi S, Hwang B, Mulligan MS, Lehtiö J, Nolta JA. Comprehensive Proteomic Analysis of Mesenchymal Stem Cell Exosomes Reveals Modulation of Angiogenesis via Nuclear Factor-KappaB Signaling. Stem Cells. 2016 Mar;34(3):601-13. doi: 10.1002/stem.2298. Epub 2016 Feb 19. PubMed PMID: 26782178.

CASEY BOOSALIS (2013 – 2015 NIH Fellow) PI: Pam Lein
Todd GK, Boosalis CA, Burzycki AA, Steinman MQ, Lester LD, et al. Towards Neuronal Organoids: A Method for Long-Term Culturing of High-Density Hippocampal Neurons. PloS one. 2013 April 25; 8(4).

Chintapalli SV, Bhardwaj G, Babu J, Hadjiyianni L, Hong Y, Todd GK, Boosalis CA, Zhang Z, Zhou X, Ma H, Anishkin A, van Rossum DB, Patterson RL. Reevaluation of the evolutionary events within recA/RAD51 phylogeny. BMC Genomics. 2013 Apr 10;14:240. doi: 10.1186/1471-2164-14-240. PubMed PMID: 23574621; PubMed Central PMCID: PMC3637515.

ALLISON HOCH (2014 – 2015 NIH Fellow)  PI: Kent Leach  (2013 -2014 Biotech Fellow)
Murphy KC, Hoch AI, Harvestine JN, Zhou D, Leach JK. Mesenchymal Stem Cell Spheroids Retain Osteogenic Phenotype Through α2β1 Signaling. Stem Cells Transl Med. 2016 Jun 30. pii: sctm.2015-0412. [Epub ahead of print] PubMed PMID: 27365484.

Hoch AI, Mittal V, Mitra D, Vollmer N, Zikry CA, Leach JK. Cell-secreted matrices perpetuate the bone-forming phenotype of differentiated mesenchymal stem cells. Biomaterials. 2015 Oct 9;74:178-187. doi: 10.1016/j.biomaterials.2015.10.003. [Epub ahead of print] PubMed PMID: 26457835.

Hoch AI, Leach JK. Concise review: optimizing expansion of bone marrow mesenchymal stem/stromal cells for clinical applications.Stem Cells Transl Med. 2015 Apr;4(4):412. doi: 10.5966/sctm.2013-0196erratum. PubMed PMID: 25795657; PubMed Central PMCID: PMC4367501.

Bhat A, Hoch AI, Decaris ML, Leach JK. Alginate hydrogels containing cell-interactive beads for bone formation. FASEB J. 2013 Dec;27(12):4844-52. doi: 10.1096/fj.12-213611. Epub 2013 Sep 4. PubMed PMID: 24005905.

Hoch AI, Leach JK. Concise review: optimizing expansion of bone marrow mesenchymal stem/stromal cells for clinical applications.Stem Cells Transl Med. 2014 May;3(5):643-52. doi: 10.5966/sctm.2013-0196. Epub 2014 Mar 28. Review. Erratum in: Stem Cells Transl Med. 2015 Apr;4(4):412. Stem Cells Transl Med. 2015 Apr;4(4):412. PubMed PMID: 24682286; PubMed Central PMCID: PMC4006491.T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Hoch AI, Binder BY, Genetos DC, Leach JK. Differentiation-dependent secretion of proangiogenic factors by mesenchymal stem cells.PLoS One. 2012;7(4):e35579. doi: 10.1371/journal.pone.0035579. Epub 2012 Apr 20. PubMed PMID: 22536411; PubMed Central PMCID: PMC3334972.

CHRISTOPHER SILTANEN (2014-2015 NIH Fellow) PI: Alex Revzin
Shin DS, You J, Rahimian A, Vu T, Siltanen C, Ehsanipour A, Stybayeva G, Sutcliffe J, Revzin A. Photodegradable hydrogels for capture, detection, and release of live cells. Angew Chem Int Ed Engl. 2014 Jul 28;53(31):8221-4. doi: 10.1002/anie.201404323. Epub 2014 Jun 16. PubMed PMID: 24931301; PubMed Central PMCID: PMC4380505.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomocular Technology

Siltanen C, Shin DS, Sutcliffe J, Revzin A. Micropatterned photodegradable hydrogels for the sorting of microbeads and cells. Angew Chem Int Ed Engl. 2013 Aug 26;52(35):9224-8. doi: 10.1002/anie.201303965. Epub 2013 Jul 19. PubMed PMID: 23868693; PubMed Central PMCID: PMC4370904.

Kirsch J, Siltanen C, Zhou Q, Revzin A, Simonian A. Biosensor technology: recent advances in threat agent detection and medicine.Chem Soc Rev. 2013 Nov 21;42(22):8733-68. doi: 10.1039/c3cs60141b. Review. PubMed PMID: 23852443.

See publications for Nicole Nozzi and Anna Marie Tuazon in 2015-16 year

See publications for Nicole Nozzi and Nicole Nozzi in 2015-16 year

 

2013 – 2014 NIH FELLOWS’ PUBLICATIONS DURING PhD

KRISTEN BECK (2013 – 2014 NIH Fellow) PI: Ian Korf
Beck KL, Weber D, Phinney BS, Smilowitz JT, Hinde K, Lönnerdal B, Korf I, Lemay DG. Comparative Proteomics of Human and Macaque Milk Reveals Species-Specific Nutrition during Postnatal Development. J Proteome Res. 2015 May 1;14(5):2143-57. doi: 10.1021/pr501243m. Epub 2015 Apr 6. PubMed PMID: 25757574.

NICHOLAS BOKULICH (2013 – 2014 NIH Fellow)  PI: David Mills
Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. The soil microbiome influences grapevine-associated microbiota. MBio. 2015 Mar 24;6(2). pii: e02527-14. doi: 10.1128/mBio.02527-14. PubMed PMID: 25805735; PubMed Central PMCID: PMC4453523.

Bokulich NA, Bergsveinson J, Ziola B, Mills DA. Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance. Elife. 2015 Mar 10;4. doi: 10.7554/eLife.04634. PubMed PMID: 25756611; PubMed Central PMCID: PMC4352708.

De Leoz ML, Kalanetra KM, Bokulich NA, Strum JS, Underwood MA, German JB, Mills DA, Lebrilla CB.Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study. J Proteome Res. 2015 Jan 2;14(1):491-502. doi: 10.1021/pr500759e. Epub 2014 Oct 28. PubMed PMID: 25300177; PubMed Central PMCID: PMC4286166.

Underwood MA, Kalanetra KM, Bokulich NA, Mirmiran M, Barile D, Tancredi DJ, German JB, Lebrilla CB, Mills DA. Prebiotic oligosaccharides in premature infants. J Pediatr Gastroenterol Nutr. 2014 Mar;58(3):352-60. doi: 10.1097/MPG.0000000000000211. PubMed PMID: 24135979.

Bokulich NA, Ohta M, Lee M, Mills DA. Indigenous bacteria and fungi drive traditional kimoto sake fermentations. Appl Environ Microbiol. 2014 Sep;80(17):5522-9. doi: 10.1128/AEM.00663-14. Epub 2014 Jun 27. PubMed PMID: 24973064; PubMed Central PMCID: PMC4136118. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Bokulich NA, Thorngate JH, Richardson PM, Mills DA. Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate. Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):E139-48. doi: 10.1073/pnas.1317377110. Epub 2013 Nov 25. PubMed PMID: 24277822; PubMed Central PMCID: PMC3890796. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Bokulich NA, Blaser MJ. A bitter aftertaste: unintended effects of artificial sweeteners on the gut microbiome. Cell Metab. 2014 Nov 4;20(5):701-3. doi: 10.1016/j.cmet.2014.10.012. Epub 2014 Nov 4. PubMed PMID: 25440050; PubMed Central PMCID: PMC4494042.

Underwood MA, Kalanetra KM, Bokulich NA, Lewis ZT, Mirmiran M, Tancredi DJ, Mills DA. A comparison of two probiotic strains of bifidobacteria in premature infants. J Pediatr. 2013 Dec;163(6):1585-1591.e9. doi: 10.1016/j.jpeds.2013.07.017. Epub 2013 Aug 29. PubMed PMID: 23993139; PubMed Central PMCID: PMC3842430.

Bokulich NA, Ohta M, Richardson PM, Mills DA. Monitoring Seasonal Changes in Winery-Resident Microbiota. PLoS One. 2013 Jun 19;8(6):e66437. Print 2013. PubMed PMID: 23840468; PubMed Central PMCID: PMC3686677.

Bokulich NA, Mills DA. Facility-specific "house" microbiome drives microbial landscapes of artisan cheesemaking plants. Appl Environ Microbiol. 2013 Sep;79(17):5214-23. doi: 10.1128/AEM.00934-13. Epub 2013 Jun 21. PubMed PMID: 23793641; PubMed Central PMCID: PMC3753952.

Bokulich NA, Mills DA, Underwood MA. Surface microbes in the neonatal intensive care unit: changes with routine cleaning and over time. J Clin Microbiol. 2013 Aug;51(8):2617-24. doi: 10.1128/JCM.00898-13. Epub 2013 Jun 5. PubMed PMID: 23740726; PubMed Central PMCID: PMC3719657.

Bokulich NA, Bamforth CW. The microbiology of malting and brewing. Microbiol Mol Biol Rev. 2013 Jun;77(2):157-72. doi: 10.1128/MMBR.00060-12. Review. PubMed PMID: 23699253; PubMed Central PMCID: PMC3668669.

Bokulich NA, Mills DA. Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. Appl Environ Microbiol. 2013 Apr;79(8):2519-26. doi: 10.1128/AEM.03870-12. Epub 2013 Feb 1. PubMed PMID: 23377949; PubMed Central PMCID: PMC3623200.

Lewis ZT, Bokulich NA, Kalanetra KM, Ruiz-Moyano S, Underwood MA, Mills DA. Use of bifidobacterial specific terminal restriction fragment length polymorphisms to complement next generation sequence profiling of infant gut communities. Anaerobe. 2013 Feb;19:62-9. doi: 10.1016/j.anaerobe.2012.12.005. Epub 2012 Dec 20. PubMed PMID: 23261904; PubMed Central PMCID: PMC4764513.

Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013 Jan;10(1):57-9. doi: 10.1038/nmeth.2276. Epub 2012 Dec 2. PubMed PMID: 23202435; PubMed Central PMCID: PMC3531572.

Ma BW, Bokulich NA, Castillo PA, Kananurak A, Underwood MA, Mills DA, Bevins CL. Routine habitat change: a source of unrecognized transient alteration of intestinal microbiota in laboratory mice. PLoS One. 2012;7(10):e47416. doi: 10.1371/journal.pone.0047416. Epub 2012 Oct 17. PubMed PMID: 23082164; PubMed Central PMCID: PMC3474821.

Bokulich NA, Joseph CM, Allen G, Benson AK, Mills DA. Next-generation sequencing reveals significant bacterial diversity of botrytized wine. PLoS One. 2012;7(5):e36357. doi: 10.1371/journal.pone.0036357. Epub 2012 May 1. PubMed PMID: 22563494; PubMed Central PMCID: PMC3341366.

Bokulich NA, Mills DA. Next-generation approaches to the microbial ecology of food fermentations. BMB Rep. 2012 Jul;45(7):377-89. PubMed PMID: 22831972.

Bokulich NA, Mills DA. Differentiation of mixed lactic acid bacteria communities in beverage fermentations using targeted terminal restriction fragment length polymorphism. Food Microbiol. 2012 Aug;31(1):126-32. doi: 10.1016/j.fm.2012.02.007. Epub 2012 Feb 21. PubMed PMID: 22475950.

JENNIFER LEE (2012 – 2014 NIH Fellow)
Lee JK, Hu JC, Yamada S, Athanasiou KA. Initiation of Chondrocyte Self-Assembly Requires an Intact Cytoskeletal Network. Tissue Eng Part A. 2016 Feb;22(3-4):318-25. doi: 10.1089/ten.TEA.2015.0491. Epub 2016 Jan 27. PubMed PMID: 26729374; PubMed Central PMCID: PMC4779322.

Lee JK, Gegg CA, Hu JC, Reddi AH, Athanasiou KA. Thyroid hormones enhance the biomechanical functionality of scaffold-free neocartilage. Arthritis Res Ther. 2015 Feb 11;17:28. doi: 10.1186/s13075-015-0541-5. PubMed PMID: 25884593; PubMed Central PMCID: PMC4355350.

Lee JK, Gegg CA, Hu JC, Kass PH, Athanasiou KA. Promoting increased mechanical properties of tissue engineered neocartilage via the application of hyperosmolarity and 4α-phorbol 12,13-didecanoate (4αPDD). J Biomech. 2014 Nov 28;47(15):3712-8. doi: 10.1016/j.jbiomech.2014.09.018. Epub 2014 Oct 2. PubMed PMID: 25442009.

Lee JK, Responte DJ, Cissell DD, Hu JC, Nolta JA, Athanasiou KA. Clinical translation of stem cells: insight for cartilage therapies.Crit Rev Biotechnol. 2014 Mar;34(1):89-100. doi: 10.3109/07388551.2013.823596. Epub 2013 Oct 1. Review. PubMed PMID: 24083452; PubMed Central PMCID: PMC4314285. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Michelson AZ, Rozenberg A, Tian Y, Sun X, Davis J, Francis AW, O'Shea VL, Halasyam M, Manlove AH, David SS, Lee JKGas-phase studies of substrates for the DNA mismatch repair enzyme MutY. J Am Chem Soc. 2012 Dec 5;134(48):19839-50. doi: 10.1021/ja309082k. Epub 2012 Nov 26. PubMed PMID: 23106240; PubMed Central PMCID: PMC4204490.

Responte DJ, Lee JK, Hu JC, Athanasiou KA. Biomechanics-driven chondrogenesis: from embryo to adult. FASEB J. 2012 Sep;26(9):3614-24. doi: 10.1096/fj.12-207241. Epub 2012 Jun 6. Review. PubMed PMID: 22673579; PubMed Central PMCID: PMC3425829

AMELIA MANLOVE (2012 – 2014 NIH FELLOW)
Nuñez NN, Manlove AH, David SS. DNMT1 and Cancer: An Electrifying Link. Chem Biol. 2015 Jul 23;22(7):810-1. doi: 10.1016/j.chembiol.2015.07.004. PubMed PMID: 26207295.

Michelson AZ, Rozenberg A, Tian Y, Sun X, Davis J, Francis AW, O'Shea VL, Halasyam M, Manlove AH, David SS, Lee JK. Gas-phase studies of substrates for the DNA mismatch repair enzyme MutY. J Am Chem Soc. 2012 Dec 5;134(48):19839-50. doi: 10.1021/ja309082k. Epub 2012 Nov 26. PubMed PMID: 23106240; PubMed Central PMCID: PMC4204490.

ABIGAIL YU (2012 – 2014 NIH Fellow) PIs: Ian Korf & David Segal
O'Geen H, Yu AS, Segal DJ. How specific is CRISPR/Cas9 really? Curr Opin Chem Biol. 2015 Dec;29:72-8. doi: 10.1016/j.cbpa.2015.10.001. Epub 2015 Oct 24. Review. PubMed PMID: 26517564; PubMed Central PMCID: PMC4684463.

Lockwood SH, Guan A, Yu AS, Zhang C, Zykovich A, Korf I, Rannala B, Segal DJ. The functional significance of common polymorphisms in zinc finger transcription factors. G3 (Bethesda). 2014 Jun 26;4(9):1647-55. doi: 10.1534/g3.114.012195. PubMed PMID: 24970883; PubMed Central PMCID: PMC4169156.

Barrilleaux BL, Burow D, Lockwood SH, Yu A, Segal DJ, Knoepfler PS. Miz-1 activates gene expression via a novel consensus DNA binding motif. PLoS One. 2014 Jul 1;9(7):e101151. doi: 10.1371/journal.pone.0101151. eCollection 2014. Erratum in: PLoS One. 2014;9(9):e108565. PubMed PMID: 24983942; PubMed Central PMCID: PMC4077741.

Meckler JF, Bhakta MS, Kim MS, Ovadia R, Habrian CH, Zykovich A, Yu A, Lockwood SH, Morbitzer R, Elsäesser J, Lahaye T, Segal DJ, Baldwin EP. Quantitative analysis of TALE-DNA interactions suggests polarity effects. Nucleic Acids Res. 2013 Apr;41(7):4118-28. doi: 10.1093/nar/gkt085. Epub 2013 Feb 13. PubMed PMID: 23408851; PubMed Central PMCID: PMC3627578.

Meier JL, Yu AS, Korf I, Segal DJ, Dervan PB. Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing. J Am Chem Soc. 2012 Oct 24;134(42):17814-22. doi: 10.1021/ja308888c. Epub 2012 Oct 10. PubMed PMID: 23013524; PubMed Central PMCID: PMC3483022.

WADE ZENO (2011 – 2012 & 2013 – 2014 NIH Fellow)
Zeno WF, Hilt S, Risbud SH, Voss JC, Longo ML. Spectroscopic Characterization of Structural Changes in Membrane Scaffold Proteins Entrapped within Mesoporous Silica Gel Monoliths. ACS Appl Mater Interfaces. 2015 Apr 29;7(16):8640-9. doi: 10.1021/acsami.5b00898. Epub 2015 Apr 20. PubMed PMID: 25849085.

Zeno WF, Hilt S, Aravagiri KK, Risbud SH, Voss JC, Parikh AN, Longo ML. Analysis of lipid phase behavior and protein conformational changes in nanolipoprotein particles upon entrapment in sol-gel-derived silica. Langmuir. 2014 Aug 19;30(32):9780-8. doi: 10.1021/la5025058. Epub 2014 Aug 6. PubMed PMID: 25062385; PubMed Central PMCID: PMC4140539.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Henderson CM, Zeno WF, Lerno LA, Longo ML, Block DE. Fermentation temperature modulates phosphatidylethanolamine and phosphatidylinositol levels in the cell membrane of Saccharomyces cerevisiae. Appl Environ Microbiol. 2013 Sep;79(17):5345-56. doi: 10.1128/AEM.01144-13. Epub 2013 Jun 28. PubMed PMID: 23811519; PubMed Central PMCID: PMC3753969.

See publications for Casey Boosalis in 2014-15 year

 

2012 – 2013 NIH FELLOWS’ PUBLICATIONS DURING PhD

BRANDON BROWN (2012 – 2013)
Jenkins DP, Yu W, Brown BM, Løjkner LD, Wulff H. Development of a QPatch automated electrophysiology assay for identifying KCa3.1 inhibitors and activators. Assay Drug Dev Technol. 2013 Nov-Dec;11(9-10):551-60. doi: 10.1089/adt.2013.543. PubMed PMID: 24351043; PubMed Central PMCID: PMC3870577. T32 GM099608 - Pharmacology Training: Bench to Bedside

Oliván-Viguera A, Valero MS, Coleman N, Brown BM, Laría C, Murillo MD, Gálvez JA, Díaz-de-Villegas MD, Wulff H, Badorrey R, Köhler R. A novel pan-negative-gating modulator of KCa2/3 channels, fluoro-di-benzoate, RA-2, inhibits endothelium-derived hyperpolarization-type relaxation in coronary artery and produces bradycardia in vivo. Mol Pharmacol. 2015 Feb;87(2):338-48. doi: 10.1124/mol.114.095745. Epub 2014 Dec 2. PubMed PMID: 25468883; PubMed Central PMCID: PMC4293453.

Coleman N, Nguyen HM, Cao Z, Brown BM, Jenkins DP, Zolkowska D, Chen YJ, Tanaka BS, Goldin AL, Rogawski MA, Pessah IN, Wulff H. The riluzole derivative 2-amino-6-trifluoromethylthio-benzothiazole (SKA-19), a mixed KCa2 activator and NaV blocker, is a potent novel anticonvulsant. Neurotherapeutics. 2015 Jan;12(1):234-49. doi: 10.1007/s13311-014-0305-y. PubMed PMID: 25256961; PubMed Central PMCID: PMC4322077.

Sahdeo S, Scott BD, McMackin MZ, Jasoliya M, Brown B, Wulff H, Perlman SL, Pook MA, Cortopassi GA. Dyclonine rescues frataxin deficiency in animal models and buccal cells of patients with Friedreich's ataxia. Hum Mol Genet. 2014 Dec 20;23(25):6848-62. doi: 10.1093/hmg/ddu408. Epub 2014 Aug 11. PubMed PMID: 25113747; PubMed Central PMCID: PMC4245046.

Coleman N, Brown BM, Oliván-Viguera A, Singh V, Olmstead MM, Valero MS, Köhler R, Wulff H. New positive Ca2+-activated K+ channel gating modulators with selectivity for KCa3.1. Mol Pharmacol. 2014 Sep;86(3):342-57. doi: 10.1124/mol.114.093286. Epub 2014 Jun 23. PubMed PMID: 24958817; PubMed Central PMCID: PMC4152908

GABRIEL RODRIGUEZ (2012 – 2013 NIH Fellow) Shota Atsumi
Tashiro Y, Rodriguez GM, Atsumi S. 2-Keto acids based biosynthesis pathways for renewable fuels and chemicals. J Ind Microbiol Biotechnol. 2015 Mar;42(3):361-73. doi: 10.1007/s10295-014-1547-8. Epub 2014 Nov 26. Review. PubMed PMID: 25424696.

Rodriguez GM, Atsumi S. Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli. Metab Eng. 2014 Sep;25:227-37. doi: 10.1016/j.ymben.2014.07.012. Epub 2014 Aug 7. PubMed PMID: 25108218; PubMed Central PMCID: PMC4411948.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology   

Rodriguez GM, Tashiro Y, Atsumi S. Expanding ester biosynthesis in Escherichia coli. Nat Chem Biol. 2014 Apr;10(4):259-65. doi: 10.1038/nchembio.1476. Epub 2014 Mar 9. PubMed PMID: 24609358; PubMed Central PMCID: PMC4411949. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Rabinovitch-Deere CA, Oliver JW, Rodriguez GM, Atsumi S. Synthetic biology and metabolic engineering approaches to produce biofuels. Chem Rev. 2013 Jul 10;113(7):4611-32. doi: 10.1021/cr300361t. Epub 2013 Mar 15. Review. PubMed PMID: 23488968.

Rodriguez GM, Atsumi S. Isobutyraldehyde production from Escherichia coli by removing aldehyde reductase activity. Microb Cell Fact. 2012 Jun 25;11:90. doi: 10.1186/1475-2859-11-90. PubMed PMID: 22731523; PubMed Central PMCID: PMC3439341.

See publications for Jennifer Lee in 2013-14 year

 

2011 – 2012 NIH FELLOWS’ PUBLICATIONS DURING PhD

REGINA MACBARB (2010 – 2012 NIH Fellow)
Makris EA, MacBarb RF, Paschos NK, Hu JC, Athanasiou KA. Combined use of chondroitinase-ABC, TGF-β1, and collagen crosslinking agent lysyl oxidase to engineer functional neotissues for fibrocartilage repair. Biomaterials. 2014 Aug;35(25):6787-96. doi: 10.1016/j.biomaterials.2014.04.083. Epub 2014 May 16. PubMed PMID: 24840619; PubMed Central PMCID: PMC4105108.T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

MacBarb RF, Paschos NK, Abeug R, Makris EA, Hu JC, Athanasiou KA. Passive strain-induced matrix synthesis and organization in shape-specific, cartilaginous neotissues. Tissue Eng Part A. 2014 Dec;20(23-24):3290-302. doi: 10.1089/ten.TEA.2013.0694. PubMed PMID: 24918268; PubMed Central PMCID: PMC4259198.

MacBarb RF, Chen AL, Hu JC, Athanasiou KA. Engineering functional anisotropy in fibrocartilage neotissues. Biomaterials. 2013 Dec;34(38):9980-9. doi: 10.1016/j.biomaterials.2013.09.026. Epub 2013 Sep 24. PubMed PMID: 24075479; PubMed Central PMCID: PMC3885350. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

MacBarb RF, Makris EA, Hu JC, Athanasiou KA. A chondroitinase-ABC and TGF-β1 treatment regimen for enhancing the mechanical properties of tissue-engineered fibrocartilage. Acta Biomater. 2013 Jan;9(1):4626-34. doi: 10.1016/j.actbio.2012.09.037. Epub 2012 Oct 4. PubMed PMID: 23041782; PubMed Central PMCID: PMC3518537. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Murphy MK, MacBarb RF, Wong ME, Athanasiou KA. Temporomandibular disorders: a review of etiology, clinical management, and tissue engineering strategies. Int J Oral Maxillofac Implants. 2013 Nov-Dec;28(6):e393-414. doi: 10.11607/jomi.te20. Review. PubMed PMID: 24278954; PubMed Central PMCID: PMC4349514.

Makris EA, MacBarb RF, Responte DJ, Hu JC, Athanasiou KA. A copper sulfate and hydroxylysine treatment regimen for enhancing collagen cross-linking and biomechanical properties in engineered neocartilage. FASEB J. 2013 Jun;27(6):2421-30. doi: 10.1096/fj.12-224030. Epub 2013 Mar 1. PubMed PMID: 23457219; PubMed Central PMCID: PMC3659348.

MATEO HERNANDEZ (2010 – 2012 NIH Fellow)
Hernandez MR, Towns EN, Ng TC, Walsh BC, Osibanjo R, Parikh AN, Land DP. Use of attenuated total reflectance Fourier transform infrared spectroscopy to monitor the development of lipid aggregate structures. Appl Opt. 2012 May 20;51(15):2842-6. doi: 10.1364/AO.51.002842. PubMed PMID: 22614584.

Hernandez MR, Towns EN, Moore J, Lee H, German JB, Lebrilla CB, Parikh AN, Land DP. Use of attenuated total reflectance Fourier transform infrared spectroscopy to study lactosylceramide and GD3 DMPC bilayers. Colloids Surf B Biointerfaces. 2012 Jun 1;94:374-7. doi: 10.1016/j.colsurfb.2012.01.034. Epub 2012 Feb 10. PubMed PMID: 22398364.

SILVIA HILT (2011 – 2012 NIH Fellow)
Zeno WF, Hilt S, Risbud SH, Voss JC, Longo ML. Spectroscopic Characterization of Structural Changes in Membrane Scaffold Proteins Entrapped within Mesoporous Silica Gel Monoliths. ACS Appl Mater Interfaces. 2015 Apr 29;7(16):8640-9. doi: 10.1021/acsami.5b00898. Epub 2015 Apr 20. PubMed PMID: 25849085.

Altman R, Ly S, Hilt S, Petrlova J, Maezawa I, Kálai T, Hideg K, Jin LW, Laurence TA, Voss JC. Protective spin-labeled fluorenes maintain amyloid beta peptide in small oligomers and limit transitions in secondary structure. Biochim Biophys Acta. 2015 Sep 14;1854(12):1860-1870. doi: 10.1016/j.bbapap.2015.09.002. [Epub ahead of print] PubMed PMID: 26374940.

Zeno WF, Hilt S, Aravagiri KK, Risbud SH, Voss JC, Parikh AN, Longo ML. Analysis of lipid phase behavior and protein conformational changes in nanolipoprotein particles upon entrapment in sol-gel-derived silica. Langmuir. 2014 Aug 19;30(32):9780-8. doi: 10.1021/la5025058. Epub 2014 Aug 6. PubMed PMID: 25062385; PubMed Central PMCID: PMC4140539.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Lagerstedt JO, Petrlova J, Hilt S, Marek A, Chung Y, Sriram R, Budamagunta MS, Desreux JF, Thonon D, Jue T, Smirnov AI, Voss JC. EPR assessment of protein sites for incorporation of Gd(III) MRI contrast labels. Contrast Media Mol Imaging. 2013 May-Jun;8(3):252-64. doi: 10.1002/cmmi.1518. PubMed PMID: 23606429; PubMed Central PMCID: PMC3633150. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Kirvan CA, Galvin JE, Hilt S, Kosanke S, Cunningham MW. Identification of streptococcal m-protein cardiopathogenic epitopes in experimental autoimmune valvulitis. J Cardiovasc Transl Res. 2014 Mar;7(2):172-81. doi: 10.1007/s12265-013-9526-4. Epub 2013 Dec 18. PubMed PMID: 24346820; PubMed Central PMCID: PMC3943786.

Ly S, Altman R, Petrlova J, Lin Y, Hilt S, Huser T, Laurence TA, Voss JC. Binding of apolipoprotein E inhibits the oligomer growth of amyloid-β peptide in solution as determined by fluorescence cross-correlation spectroscopy. J Biol Chem. 2013 Apr 26;288(17):11628-35. doi: 10.1074/jbc.M112.411900. Epub 2013 Feb 21. PubMed PMID: 23430745; PubMed Central PMCID: PMC3636854.

NANCY ZENG (2010 – 2012 NIH Fellow) Bill Ristenpart
Zeng NF, Ristenpart WD. Mechanical response of red blood cells entering a constriction. Biomicrofluidics. 2014 Dec 11;8(6):064123. doi: 10.1063/1.4904058. eCollection 2014 Nov. PubMed PMID: 25553197; PubMed Central PMCID: PMC4265125.

See publications for Wade Zeno in 2013-14 year

 

2010 – 2011 NIH FELLOWS’ PUBLICATIONS DURING PhD

DMITRY GRAPOV (2010 - 2011 NIH Fellow)  PI: John Newman
Schuster GU, Bratt JM, Jiang X, Pedersen TL, Grapov D, Adkins Y, Kelley DS, Newman JW, Kenyon NJ, Stephensen CB. Dietary long-chain omega-3 fatty acids do not diminish eosinophilic pulmonary inflammation in mice. Am J Respir Cell Mol Biol. 2014 Mar;50(3):626-36. doi: 10.1165/rcmb.2013-0136OC. PubMed PMID: 24134486; PubMed Central PMCID: PMC4068931. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Smilowitz JT, Totten SM, Huang J, Grapov D, Durham HA, Lammi-Keefe CJ, Lebrilla C, German JB. Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. J Nutr. 2013 Dec;143(12):1906-12. doi: 10.3945/jn.113.180695. Epub 2013 Sep 18. PubMed PMID: 24047700; PubMed Central PMCID: PMC3827637.

Grapov D, Adams SH, Pedersen TL, Garvey WT, Newman JW. Type 2 diabetes associated changes in the plasma non-esterified fatty acids, oxylipins and endocannabinoids. PLoS One. 2012;7(11):e48852. doi: 10.1371/journal.pone.0048852. Epub 2012 Nov 8. PubMed PMID: 23144998; PubMed Central PMCID: PMC3493609. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Grapov D, Newman JW. imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel. Bioinformatics. 2012 Sep 1;28(17):2288-90. doi: 10.1093/bioinformatics/bts439. Epub 2012 Jul 18. PubMed PMID: 22815358; PubMed Central PMCID: PMC3426848. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

JOSHI, GEETIKA (2010 – 2011 NIH Fellow)
Joshi G, Schmidt R, Scow KM, Denison MS, Hristova KR. Gene mdpC plays a regulatory role in the methyl-tert-butyl ether degradation pathway of Methylibium petroleiphilum strain PM1. FEMS Microbiol Lett. 2015 Apr;362(7). pii: fnv029. doi: 10.1093/femsle/fnv029. Epub 2015 Feb 26. PubMed PMID: 25724531; PubMed Central PMCID: PMC4459789. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology  

DANIËL MELTERS (2009 – 2011 NIH Fellow) Ian Korf
Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biol. 2013 Jan 30;14(1):R10. doi: 10.1186/gb-2013-14-1-r10. PubMed PMID: 23363705; PubMed Central PMCID: PMC4053949. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Melters DP, Paliulis LV, Korf IF, Chan SW. Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis. Chromosome Res. 2012 Jul;20(5):579-93. doi: 10.1007/s10577-012-9292-1. Review. PubMed PMID: 22766638.

See publications for Regina MacBarb, Mateo Hernandez & Nancy Zeng in 2011-12 year

 

2009 – 2010 NIH FELLOWS’ PUBLICATIONS DURING PhD

RENA MIZRAHI (NEE GOODMAN (2009 – 2010 NIH Fellow)
Goodman RA, Macbeth MR, Beal PA. ADAR proteins: structure and catalytic mechanism. Curr Top Microbiol Immunol. 2012;353:1-33. doi: 10.1007/82_2011_144. Review. PubMed PMID: 21769729.

Schirle NT, Goodman RA, Krishnamurthy M, Beal PA. Selective inhibition of ADAR2-catalyzed editing of the serotonin 2c receptor pre-mRNA by a helix-threading peptide. Org Biomol Chem. 2010 Nov 7;8(21):4898-904. doi: 10.1039/c0ob00309c. Epub 2010 Aug 31. PubMed PMID: 20820662.

Yeo J, Goodman RA, Schirle NT, David SS, Beal PA. RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1.Proc Natl Acad Sci U S A. 2010 Nov 30;107(48):20715-9. doi: 10.1073/pnas.1009231107. Epub 2010 Nov 10. PubMed PMID: 21068368; PubMed Central PMCID: PMC2996456.

Pokharel S, Jayalath P, Maydanovych O, Goodman RA, Wang SC, Tantillo DJ, Beal PA. Matching active site and substrate structures for an RNA editing reaction. J Am Chem Soc. 2009 Aug 26;131(33):11882-91. doi: 10.1021/ja9034076. PubMed PMID: 19642681.

RAQUEL OROZCO-ALCARAZ (2009 – 2010 NIH Fellow)
Orozco-Alcaraz R, Kuhl TL. Interaction forces between DPPC bilayers on glass. Langmuir. 2013 Jan 8;29(1):337-43. doi: 10.1021/la3039329. Epub 2012 Dec 14. PubMed PMID: 23199333; PubMed Central PMCID: PMC3576029. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Orozco-Alcaraz R, Kuhl TL. Impact of membrane fluidity on steric stabilization by lipopolymers. Langmuir. 2012 May 15;28(19):7470-5. doi: 10.1021/la3008552. Epub 2012 May 3. PubMed PMID: 22537191.

SUNNY SHAH (2008 – 2010 NIH Fellow) PI: Alex Revzin
Shah SS, Kim M, Foster E, Vu T, Patel D, Chen LJ, Verkhoturov SV, Schweikert E, Tae G, Revzin A. Electrochemical release of hepatocyte-on-hydrogel microstructures from ITO substrates. Anal Bioanal Chem. 2012 Feb;402(5):1847-56. doi: 10.1007/s00216-011-5613-z. Epub 2011 Dec 29. PubMed PMID: 22203370.

Chen LJ, Seo JH, Eller MJ, Verkhoturov SV, Shah SS, Revzin A, Schweikert EA. Quantitative label-free characterization of avidin-biotin assemblies on silanized glass. Anal Chem. 2011 Sep 15;83(18):7173-8. doi: 10.1021/ac2016085. Epub 2011 Aug 29. PubMed PMID: 21842883; PubMed Central PMCID: PMC3186069.

Chen LJ, Shah SS, Silangcruz J, Eller MJ, Verkhoturov SV, Revzin A, Schweikert EA. Characterization and Quantification of Nanoparticle-Antibody Conjugates on Cells Using C(60) ToF SIMS in the Event-By-Event Bombardment/Detection Mode. Int J Mass Spectrom. 2011 Jun 1;303(2-3):97-102. PubMed PMID: 21691427; PubMed Central PMCID: PMC3117593.

Chen LJ, Shah SS, Verkhoturov SV, Revzin A, Schweikert EA. Characterization and quantification of biological micropatterns using Cluster-SIMS. Surf Interface Anal. 2011;43(1-2):555-558. PubMed PMID: 21278908; PubMed Central PMCID: PMC3026387.

Shah SS, Howland MC, Chen LJ, Silangcruz J, Verkhoturov SV, Schweikert EA, Parikh AN, Revzin A. Micropatterning of proteins and mammalian cells on indium tin oxide. ACS Appl Mater Interfaces. 2009 Nov;1(11):2592-601. doi: 10.1021/am900508m. PubMed PMID: 20356132; PubMed Central PMCID: PMC2901501. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Kim M, Lee JY, Shah SS, Tae G, Revzin A. On-cue detachment of hydrogels and cells from optically transparent electrodes. Chem Commun (Camb). 2009 Oct 21;(39):5865-7. doi: 10.1039/b909169f. Epub 2009 Aug 12. PubMed PMID: 19787123; PubMed Central PMCID: PMC2896494. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Lee JY, Shah SS, Yan J, Howland MC, Parikh AN, Pan T, Revzin A. Integrating sensing hydrogel microstructures into micropatterned hepatocellular cocultures. Langmuir. 2009 Apr 9;25(6):3880-6. doi: 10.1021/la803635r. PubMed PMID: 19275186; PubMed Central PMCID: PMC2749523.

Shah S, Revzin A. Patterning cells on optically transparent indium tin oxide electrodes. J Vis Exp. 2007;(7):259. doi: 10.3791/259. Epub 2007 Aug 20. PubMed PMID: 18989431; PubMed Central PMCID: PMC2565855.

Lee JY, Shah SS, Zimmer CC, Liu GY, Revzin A. Use of photolithography to encode cell adhesive domains into protein microarrays.Langmuir. 2008 Mar 4;24(5):2232-9. doi: 10.1021/la702883d. Epub 2008 Jan 17. PubMed PMID: 18198912.

See publications for Daniél Melters in 2010-11 year

 

2008 – 2009 NIH FELLOWS’ PUBLICATIONS DURING PhD

DAVID DALLAS (2007 – 2009 NIH Fellow)
Dallas DC, Guerrero A, Khaldi N, Castillo PA, Martin WF, Smilowitz JT, Bevins CL, Barile D, German JB, Lebrilla CB. Extensive in vivo human milk peptidomics reveals specific proteolysis yielding protective antimicrobial peptides. J Proteome Res. 2013 May 3;12(5):2295-304. doi: 10.1021/pr400212z. Epub 2013 Apr 24. PubMed PMID: 23586814; PubMed Central PMCID: PMC3662810.

Garrido D, Dallas DC, Mills DA. Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications. Microbiology. 2013 Apr;159(Pt 4):649-64. doi: 10.1099/mic.0.064113-0. Epub 2013 Mar 4. Review. PubMed PMID: 23460033; PubMed Central PMCID: PMC4083661.

Dallas DC, Sela D, Underwood MA, German JB, Lebrilla C. Protein-Linked Glycan Degradation in Infants Fed Human Milk. J Glycomics Lipidomics. 2012 May 1;Suppl 1:002. PubMed PMID: 24533224; PubMed Central PMCID: PMC3923763.

Dallas DC, Martin WF, Hua S, German JB. Automated glycopeptide analysis--review of current state and future directions. Brief Bioinform. 2013 May;14(3):361-74. doi: 10.1093/bib/bbs045. Epub 2012 Jul 27. Review. PubMed PMID: 22843980; PubMed Central PMCID: PMC3659302.

Dallas DC, Underwood MA, Zivkovic AM, German JB. Digestion of Protein in Premature and Term Infants. J Nutr Disord Ther. 2012 Apr 23;2(3):112. PubMed PMID: 24744976; PubMed Central PMCID: PMC3988022.

German JB, Zivkovic AM, Dallas DC, Smilowitz JT. Nutrigenomics and personalized diets: What will they mean for food? Annu Rev Food Sci Technol. 2011;2:97-123. doi: 10.1146/annurev.food.102308.124147. Review. PubMed PMID: 22129377; PubMed Central PMCID: PMC4414021.

Dallas DC, Martin WF, Strum JS, Zivkovic AM, Smilowitz JT, Underwood MA, Affolter M, Lebrilla CB, German JB. N-linked glycan profiling of mature human milk by high-performance microfluidic chip liquid chromatography time-of-flight tandem mass spectrometry. J Agric Food Chem. 2011 Apr 27;59(8):4255-63. doi: 10.1021/jf104681p. Epub 2011 Mar 18. PubMed PMID: 21384928; PubMed Central PMCID: PMC4422756.

ERIN KENT (NEE TAPLEY) (2007 – 2009 NIH Fellow)
Tapley EC, Starr DA. Connecting the nucleus to the cytoskeleton by SUN-KASH bridges across the nuclear envelope. Curr Opin Cell Biol. 2013 Feb;25(1):57-62. doi: 10.1016/j.ceb.2012.10.014. Epub 2012 Nov 10. Review. PubMed PMID: 23149102; PubMed Central PMCID: PMC3578026.

Tapley EC, Ly N, Starr DA. Multiple mechanisms actively target the SUN protein UNC-84 to the inner nuclear membrane. Mol Biol Cell. 2011 May 15;22(10):1739-52. doi: 10.1091/mbc.E10-08-0733. Epub 2011 Mar 16. PubMed PMID: 21411627; PubMed Central PMCID: PMC3093325.

Kang MA, Mott TM, Tapley EC, Lewis EE, Luckhart S. Insulin regulates aging and oxidative stress in Anopheles stephensi. J Exp Biol. 2008 Mar;211(Pt 5):741-8. doi: 10.1242/jeb.012955. PubMed PMID: 18281336; PubMed Central PMCID: PMC2592302.

KRISTINA MAHAN (2008 – 2009 NIH Fellow)
Mahan KM, Penrod JT, Ju KS, Al Kass N, Tan WA, Truong R, Parales JV, Parales RE. Selection for growth on 3-nitrotoluene by 2-nitrotoluene-utilizing Acidovorax sp. strain JS42 identifies nitroarene dioxygenases with altered specificities. Appl Environ Microbiol. 2015 Jan;81(1):309-19. doi: 10.1128/AEM.02772-14. Epub 2014 Oct 24. PubMed PMID: 25344236; PubMed Central PMCID: PMC4272708.

JOSEPH RAMAHI (2007 – 2009 NIH Fellow)
Ravi M, Shibata F, Ramahi JS, Nagaki K, Chen C, Murata M, Chan SW. Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana. PLoS Genet. 2011 Jun;7(6):e1002121. doi: 10.1371/journal.pgen.1002121. Epub 2011 Jun 9. PubMed PMID: 21695238; PubMed Central PMCID: PMC3111537.

Ravi M, Kwong PN, Menorca RM, Valencia JT, Ramahi JS, Stewart JL, Tran RK, Sundaresan V, Comai L, Chan SW. The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana. Genetics. 2010 Oct;186(2):461-71. doi: 10.1534/genetics.110.120337. Epub 2010 Jul 13. PubMed PMID: 20628040; PubMed Central PMCID: PMC2954480.

DAVID SELA (2007 – 2009 NIH Fellow) David Mills
Sela DABifidobacterial utilization of human milk oligosaccharides. Int J Food Microbiol. 2011 Sep 1;149(1):58-64. doi: 10.1016/j.ijfoodmicro.2011.01.025. Epub 2011 Jan 26. Review. PubMed PMID: 21342711.

Sela DA, Li Y, Lerno L, Wu S, Marcobal AM, German JB, Chen X, Lebrilla CB, Mills DA. An infant-associated bacterial commensal utilizes breast milk sialyloligosaccharides. J Biol Chem. 2011 Apr 8;286(14):11909-18. doi: 10.1074/jbc.M110.193359. Epub 2011 Feb 2. Erratum in: J Biol Chem. 2011 Jul 1;286(26):23620. PubMed PMID: 21288901; PubMed Central PMCID: PMC3069393.

LoCascio RG, Desai P, Sela DA, Weimer B, Mills DA. Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Appl Environ Microbiol. 2010 Nov;76(22):7373-81. doi: 10.1128/AEM.00675-10. Epub 2010 Aug 27. PubMed PMID: 20802066; PubMed Central PMCID: PMC2976205.

Sela DA, Mills DA. Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides. Trends Microbiol. 2010 Jul;18(7):298-307. doi: 10.1016/j.tim.2010.03.008. Epub 2010 Apr 19. Review. PubMed PMID: 20409714; PubMed Central PMCID: PMC2902656.

Barboza M, Sela DA, Pirim C, Locascio RG, Freeman SL, German JB, Mills DA, Lebrilla CB. Glycoprofiling bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain-specific, preferential consumption of glycans. Appl Environ Microbiol. 2009 Dec;75(23):7319-25. doi: 10.1128/AEM.00842-09. Epub 2009 Oct 2. PubMed PMID: 19801485; PubMed Central PMCID: PMC2786398.

Ventura M, Turroni F, Lima-Mendez G, Foroni E, Zomer A, Duranti S, Giubellini V, Bottacini F, Horvath P, Barrangou R, Sela DA, Mills DA, van Sinderen D. Comparative analyses of prophage-like elements present in bifidobacterial genomes. Appl Environ Microbiol. 2009 Nov;75(21):6929-36. doi: 10.1128/AEM.01112-09. Epub 2009 Sep 4. PubMed PMID: 19734330; PubMed Central PMCID: PMC2772436.

Marcobal AM, Sela DA, Wolf YI, Makarova KS, Mills DA. Role of hypermutability in the evolution of the genus Oenococcus. J Bacteriol. 2008 Jan;190(2):564-70. Epub 2007 Nov 9. PubMed PMID: 17993526; PubMed Central PMCID: PMC2223689.

Sela DA, Rawsthorne H, Mills DA. Characterization of the lactococcal group II intron target site in its native host. Plasmid. 2007 Sep;58(2):127-39. Epub 2007 Apr 3. PubMed PMID: 17408740.

LoCascio RG, Ninonuevo MR, Freeman SL, Sela DA, Grimm R, Lebrilla CB, Mills DA, German JB. Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. J Agric Food Chem. 2007 Oct 31;55(22):8914-9. Epub 2007 Oct 5. PubMed PMID: 17915960.

See publications for Sunny Shah in 2009-10 year

 

2007 – 2008 NIH FELLOWS’ PUBLICATIONS DURING PhD

DONALD BARKAUSKAUS (2007 – 2008 NIH Fellow) David Rocke
Barkauskas DA, Rocke DM. A general-purpose baseline estimation algorithm for spectroscopic data. Anal Chim Acta. 2010 Jan 11;657(2):191-7. doi: 10.1016/j.aca.2009.10.043. Epub . PubMed PMID: 20005331; PubMed Central PMCID: PMC2806822.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Barkauskas DA, An HJ, Kronewitter SR, de Leoz ML, Chew HK, de Vere White RW, Leiserowitz GS, Miyamoto S, Lebrilla CB, Rocke DM. Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data. Bioinformatics. 2009 Jan 15;25(2):251-7. doi: 10.1093/bioinformatics/btn610. Epub 2008 Dec 9. PubMed PMID: 19073586; PubMed Central PMCID: PMC2639011.

Barkauskas DA, Kronewitter SR, Lebrilla CB, Rocke DM. Analysis of MALDI FT-ICR mass spectrometry data: a time series approach. Anal Chim Acta. 2009 Aug 26;648(2):207-14. doi: 10.1016/j.aca.2009.06.064. Epub 2009 Jul 5. PubMed PMID: 19646586; PubMed Central PMCID: PMC2772212.  T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

DOMINIK GREEN (2006 – 2008 NIH Fellow)
Green DJ, Wang JC, Xiao F, Cai Y, Balhorn R, Guo P, Cheng RH. Self-assembly of heptameric nanoparticles derived from tag-functionalized phi29 connectors. ACS Nano. 2010 Dec 28;4(12):7651-9. doi: 10.1021/nn1024829. Epub 2010 Nov 16. PubMed PMID: 21080706.

Moscoso CG, Sun Y, Poon S, Xing L, Kan E, Martin L, Green D, Lin F, Vahlne AG, Barnett S, Srivastava I, Cheng RH. Quaternary structures of HIV Env immunogen exhibit conformational vicissitudes and interface diminution elicited by ligand binding. Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6091-6. doi: 10.1073/pnas.1016113108. Epub 2011 Mar 28. PubMed PMID: 21444771; PubMed Central PMCID: PMC3076850.

Xiao F, Cai Y, Wang JC, Green D, Cheng RH, Demeler B, Guo P. Adjustable ellipsoid nanoparticles assembled from re-engineered connectors of the bacteriophage phi29 DNA packaging motor. ACS Nano. 2009 Aug 25;3(8):2163-70. doi: 10.1021/nn900187k. PubMed PMID: 19634910; PubMed Central PMCID: PMC2731514.

MICHAEL HOWLAND (2007 – 2008 NIH Fellow) Atul Parikh
Howland MC, Parikh AN. Model studies of membrane disruption by photogenerated oxidative assault. J Phys Chem B. 2010 May 20;114(19):6377-85. doi: 10.1021/jp102861v. PubMed PMID: 20415456.

Smith HL, Howland MC, Szmodis AW, Li Q, Daemen LL, Parikh AN, Majewski J. Early stages of oxidative stress-induced membrane permeabilization: a neutron reflectometry study. J Am Chem Soc. 2009 Mar 18;131(10):3631-8. doi: 10.1021/ja807680m. PubMed PMID: 19275260; PubMed Central PMCID: PMC2703001.

Shah SS, Howland MC, Chen LJ, Silangcruz J, Verkhoturov SV, Schweikert EA, Parikh AN, Revzin A. Micropatterning of proteins and mammalian cells on indium tin oxide. ACS Appl Mater Interfaces. 2009 Nov;1(11):2592-601. doi: 10.1021/am900508m. PubMed PMID: 20356132; PubMed Central PMCID: PMC2901501. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Lee JY, Shah SS, Yan J, Howland MC, Parikh AN, Pan T, Revzin A. Integrating sensing hydrogel microstructures into micropatterned hepatocellular cocultures. Langmuir. 2009 Apr 9;25(6):3880-6. doi: 10.1021/la803635r. PubMed PMID: 19275186; PubMed Central PMCID: PMC2749523.

Shreve AP, Howland MC, Sapuri-Butti AR, Allen TW, Parikh AN. Evidence for leaflet-dependent redistribution of charged molecules in fluid supported phospholipid bilayers. Langmuir. 2008 Dec 2;24(23):13250-3. doi: 10.1021/la802909c. PubMed PMID: 19007257; PubMed Central PMCID: PMC2670441.

Oliver AE, Kendall EL, Howland MC, Sanii B, Shreve AP, Parikh AN. Protecting, patterning, and scaffolding supported lipid membranes using carbohydrate glasses. Lab Chip. 2008 Jun;8(6):892-7. doi: 10.1039/b800370j. Epub 2008 Apr 11. Erratum in: Lab Chip. 2010 Dec 21;10(24):3427. PubMed PMID: 18497908.

Howland MC, Szmodis AW, Sanii B, Parikh AN. Characterization of physical properties of supported phospholipid membranes using imaging ellipsometry at optical wavelengths. Biophys J. 2007 Feb 15;92(4):1306-17. Epub 2006 Dec 1. PubMed PMID: 17142265; PubMed Central PMCID: PMC1783900.

Howland MC, Johal MS, Parikh AN. Transition from homogeneous Langmuir-Blodgett monolayers to striped bilayers driven by a wetting instability in octadecylsiloxane monolayers. Langmuir. 2005 Nov 8;21(23):10468-74. PubMed PMID: 16262307.

Howland MC, Sapuri-Butti AR, Dixit SS, Dattelbaum AM, Shreve AP, Parikh AN. Phospholipid morphologies on photochemically patterned silane monolayers. J Am Chem Soc. 2005 May 11;127(18):6752-65. PubMed PMID: 15869298.

See publications for David Dallas, Erin Kent, Joseph Ramahi & David Sela in 2008-09 year

 

2006 – 2007 NIH FELLOWS’ PUBLICATIONS DURING PhD

SUZANNE BALKO (NEE BARBER) (2005 – 2007 NIH Fellow)
Balko SM, Kreer T, Costanzo PJ, Patten TE, Johner A, Kuhl TL, Marques CM. Polymer brushes under high load. PLoS One. 2013;8(3):e58392. doi: 10.1371/journal.pone.0058392. Epub 2013 Mar 13. PubMed PMID: 23516470; PubMed Central PMCID: PMC3596396.

ALLISON DICKEY (2005 – 2007 NIH Fellow)
Dickey AN, Yim WS, Faller R. Using ergosterol to mitigate the deleterious effects of ethanol on bilayer structure. J Phys Chem B. 2009 Feb 26;113(8):2388-97. doi: 10.1021/jp803092z. Erratum in: J Phys Chem B. 2009 Apr 23;113(16):5675. Yim, Wen-Saul [corrected to Yim, Wen-Sau]. PubMed PMID: 19191714; PubMed Central PMCID: PMC2668826. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Dickey AN, Faller R. Behavioral differences between phosphatidic acid and phosphatidylcholine in the presence of the nicotinic acetylcholine receptor. Biophys J. 2008 Dec 15;95(12):5637-47. doi: 10.1529/biophysj.108.136895. Epub 2008 Oct 3. PubMed PMID: 18835908; PubMed Central PMCID: PMC2599862.

Dickey A, Faller R. Examining the contributions of lipid shape and headgroup charge on bilayer behavior. Biophys J. 2008 Sep 15;95(6):2636-46. doi: 10.1529/biophysj.107.128074. Epub 2008 May 30. PubMed PMID: 18515396; PubMed Central PMCID: PMC2527283.

Bennun SV, Dickey AN, Xing C, Faller R. Simulations of Biomembranes and Water: Important Technical Aspects. Fluid Phase Equilib. 2007 Dec 1;261(1-2):18-25. PubMed PMID: 19050734; PubMed Central PMCID: PMC2151735. T32 GM008799 - Training Program in Biomolecular Technology; Training Program in Biomolecular Technology

Dickey AN, Faller R. How alcohol chain-length and concentration modulate hydrogen bond formation in a lipid bilayer. Biophys J. 2007 Apr 1;92(7):2366-76. Epub 2007 Jan 11. PubMed PMID: 17218462; PubMed Central PMCID: PMC1864837. Dickey AN, Faller R. How alcohol chain-length and concentration modulate hydrogen bond formation in a lipid bilayer. Biophys J. 2007 Apr 1;92(7):2366-76. Epub 2007 Jan 11. PubMed PMID: 17218462; PubMed Central PMCID: PMC1864837.

COREY DODGE (2005 – 2007 NIH Fellow)  PI: Karen McDonald
No Publications

JENNIFER WARREN (2005 – 2007 NIH Fellow)
Merod RT, Warren JE, McCaslin H, Wuertz S. Toward automated analysis of biofilm architecture: bias caused by extraneous confocal laser scanning microscopy images. Appl Environ Microbiol. 2007 Aug;73(15):4922-30. Epub 2007 Jun 1. PubMed PMID: 17545329; PubMed Central PMCID: PMC1951045.

See publications for Dominik Green in 2007-08 year

 

2005 – 2006 NIH FELLOWS’ PUBLICATIONS DURING PhD

GIAN ODDONE (2004 – 2006 NIH Fellow)
Oddone GM, Mills DA, Block DE. A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression. Metab Eng. 2009 Nov;11(6):367-81. doi: 10.1016/j.ymben.2009.07.007. Epub 2009 Aug 8. PubMed PMID: 19666133.

Oddone GM, Mills DA, Block DE. Dual inducible expression of recombinant GFP and targeted antisense RNA in Lactococcus lactis.Plasmid. 2009 Sep;62(2):108-18. doi: 10.1016/j.plasmid.2009.06.002. Epub 2009 Jun 10. PubMed PMID: 19523486.

Oddone GM, Mills DA, Block DE. Incorporation of nisI-mediated nisin immunity improves vector-based nisin-controlled gene expression in lactic acid bacteria. Plasmid. 2009 May;61(3):151-8. doi: 10.1016/j.plasmid.2008.12.001. Epub 2009 Jan 12. PubMed PMID: 19141301.

Oddone GM, Lan CQ, Rawsthorne H, Mills DA, Block DE. Optimization of fed-batch production of the model recombinant protein GFP in Lactococcus lactis. Biotechnol Bioeng. 2007 Apr 15;96(6):1127-38. PubMed PMID: 17117427.

Lan CQ, Oddone G, Mills DA, Block DE. Kinetics of Lactococcus lactis growth and metabolite formation under aerobic and anaerobic conditions in the presence or absence of hemin. Biotechnol Bioeng. 2006 Dec 20;95(6):1070-80. PubMed PMID: 16807924.

See publications for Suzanne Balko, Allison Dickey & Jennifer Warren in 2006-07 year

 

2004 – 2005 NIH FELLOWS’ PUBLICATIONS DURING PhD

DANIEL SCOTT (2004 – 2005 NIH Fellow)
Scott D, Toney M, Muzikár M. Harnessing the mechanism of glutathione reductase for synthesis of active site bound metallic nanoparticles and electrical connection to electrodes. J Am Chem Soc. 2008 Jan 23;130(3):865-74. doi: 10.1021/ja074660g. Epub 2008 Jan 1. PubMed PMID: 18166048.

ALAN SZMODIS (2004 – 2005 NIH Fellow) Atul Parikh
Szmodis AW, Blanchette CD, Longo ML, Orme CA, Parikh AN. Thermally induced phase separation in supported bilayers of glycosphingolipid and phospholipid mixtures. Biointerphases. 2010 Dec;5(4):120-30. doi: 10.1116/1.3524295. PubMed PMID: 21219033.

Smith HL, Howland MC, Szmodis AW, Li Q, Daemen LL, Parikh AN, Majewski J. Early stages of oxidative stress-induced membrane permeabilization: a neutron reflectometry study. J Am Chem Soc. 2009 Mar 18;131(10):3631-8. doi: 10.1021/ja807680m. PubMed PMID: 19275260; PubMed Central PMCID: PMC2703001.

Howland MC, Szmodis AW, Sanii B, Parikh AN. Characterization of physical properties of supported phospholipid membranes using imaging ellipsometry at optical wavelengths. Biophys J. 2007 Feb 15;92(4):1306-17. Epub 2006 Dec 1. PubMed PMID: 17142265; PubMed Central PMCID: PMC1783900.

Dixit SS, Szmodis A, Parikh AN. Glass bead probes of local structural and mechanical properties of fluid, supported membranes.Chemphyschem. 2006 Aug 11;7(8):1678-81. PubMed PMID: 16847842.

ROBERT WARD (2004 – 2005 NIH Fellow)
Ward RE, Niñonuevo M, Mills DA, Lebrilla CB, German JB. In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri. Appl Environ Microbiol. 2006 Jun;72(6):4497-9. PubMed PMID: 16751577; PubMed Central PMCID: PMC1489581.

Niñonuevo M, An H, Yin H, Killeen K, Grimm R, Ward R, German B, Lebrilla C. Nanoliquid chromatography-mass spectrometry of oligosaccharides employing graphitized carbon chromatography on microchip with a high-accuracy mass analyzer. Electrophoresis. 2005 Oct;26(19):3641-9. PubMed PMID: 16196105.

Ward RE, German JB. Understanding milk's bioactive components: a goal for the genomics toolbox. J Nutr. 2004 Apr;134(4):962S-7S. Review. PubMed PMID: 15051855.

German JB, Dillard CJ, Ward RE. Bioactive components in milk. Curr Opin Clin Nutr Metab Care. 2002 Nov;5(6):653-8. Review. PubMed PMID: 12394640.

Ninonuevo MR, Park Y, Yin H, Zhang J, Ward RE, Clowers BH, German JB, Freeman SL, Killeen K, Grimm R, Lebrilla CB. A strategy for annotating the human milk glycome. J Agric Food Chem. 2006 Oct 4;54(20):7471-80. PubMed PMID: 17002410.

See publications for Gian Oddone in 2005-06 year

 

2003 – 2004 NIH FELLOWS’ PUBLICATIONS DURING PhD

BLANCHETTE, CRAIG (2002 – 2004 NIH Fellow
Longo ML, Blanchette CD. Imaging cerebroside-rich domains for phase and shape characterization in binary and ternary mixtures. Biochim Biophys Acta. 2010 Jul;1798(7):1357-67. doi: 10.1016/j.bbamem.2009.11.013. Epub 2009 Nov 26. Review. PubMed PMID: 19945421.

Goksu EI, Vanegas JM, Blanchette CD, Lin WC, Longo ML. AFM for structure and dynamics of biomembranes. Biochim Biophys Acta. 2009 Jan;1788(1):254-66. doi: 10.1016/j.bbamem.2008.08.021. Epub 2008 Sep 11. Review. PubMed PMID: 18822269.

Blanchette CD, Lin WC, Orme CA, Ratto TV, Longo ML. Domain nucleation rates and interfacial line tensions in supported bilayers of ternary mixtures containing galactosylceramide. Biophys J. 2008 Apr 1;94(7):2691-7. Epub 2007 Dec 7. PubMed PMID: 18065459; PubMed Central PMCID: PMC2267153.

Lin WC, Blanchette CD, Longo ML. Fluid-phase chain unsaturation controlling domain microstructure and phase in ternary lipid bilayers containing GalCer and cholesterol. Biophys J. 2007 Apr 15;92(8):2831-41. Epub 2007 Jan 19. PubMed PMID: 17237202; PubMed Central PMCID: PMC1831699.

Lin WC, Blanchette CD, Ratto TV, Longo ML. Lipid asymmetry in DLPC/DSPC-supported lipid bilayers: a combined AFM and fluorescence microscopy study. Biophys J. 2006 Jan 1;90(1):228-37. Epub 2005 Oct 7. PubMed PMID: 16214871; PubMed Central PMCID: PMC1367021.

Blanchette CD, Lin WC, Ratto TV, Longo ML. Galactosylceramide domain microstructure: impact of cholesterol and nucleation/growth conditions. Biophys J. 2006 Jun 15;90(12):4466-78. Epub 2006 Mar 24. PubMed PMID: 16565044; PubMed Central PMCID: PMC1471859.

Lin WC, Blanchette CD, Ratto TV, Longo ML. Lipid asymmetry in DLPC/DSPC-supported lipid bilayers: a combined AFM and fluorescence microscopy study. Biophys J. 2006 Jan 1;90(1):228-37. Epub 2005 Oct 7. PubMed PMID: 16214871; PubMed Central PMCID: PMC1367021.

Blanchette CD, Lin WC, Ratto TV, Longo ML. Galactosylceramide domain microstructure: impact of cholesterol and nucleation/growth conditions. Biophys J. 2006 Jun 15;90(12):4466-78. Epub 2006 Mar 24. PubMed PMID: 16565044; PubMed Central PMCID: PMC1471859.

Blanchette CD, Orme CA, Ratto TV, Longo ML. Quantifying growth of symmetric and asymmetric lipid bilayer domains. Langmuir. 2008 Feb 19;24(4):1219-24. Epub 2007 Dec 7. PubMed PMID: 18062709.

Lin WC, Blanchette CD, Ratto TV, Longo ML. Lipid domains in supported lipid bilayer for atomic force microscopy. Methods Mol Biol. 2007;400:503-13. Review. PubMed PMID: 17951756.

Blanchette CD, Lin WC, Orme CA, Ratto TV, Longo ML. Using nucleation rates to determine the interfacial line tension of symmetric and asymmetric lipid bilayer domains. Langmuir. 2007 May 22;23(11):5875-7. Epub 2007 Apr 24. PubMed PMID: 17451264.

CHAD GREEN (2002 – 2004 NIH Fellow) Scott Simon
Zhang H, Schaff UY, Green CE, Chen H, Sarantos MR, Hu Y, Wara D, Simon SI, Lowell CA. Impaired integrin-dependent function in Wiskott-Aldrich syndrome protein-deficient murine and human neutrophils. Immunity. 2006 Aug;25(2):285-95. Epub 2006 Aug 10. PubMed PMID: 16901726.

Simon SI, Green CEMolecular mechanics and dynamics of leukocyte recruitment during inflammation. Annu Rev Biomed Eng. 2005;7:151-85. Review. PubMed PMID: 16004569.

King MR, Sumagin R, Green CE, Simon SI. Rolling dynamics of a neutrophil with redistributed L-selectin. Math Biosci. 2005 Mar;194(1):71-9. PubMed PMID: 15836865.

Mattila PE, Green CE, Schaff U, Simon SI, Walcheck B. Cytoskeletal interactions regulate inducible L-selectin clustering. Am J Physiol Cell Physiol. 2005 Aug;289(2):C323-32. Epub 2005 Mar 23. PubMed PMID: 15788481.

Green CE, Schaff UY, Sarantos MR, Lum AF, Staunton DE, Simon SI. Dynamic shifts in LFA-1 affinity regulate neutrophil rolling, arrest, and transmigration on inflamed endothelium. Blood. 2006 Mar 1;107(5):2101-11. Epub 2005 Nov 3. PubMed PMID: 16269618; PubMed Central PMCID: PMC1895714.

Green CE, Pearson DN, Camphausen RT, Staunton DE, Simon SI. Shear-dependent capping of L-selectin and P-selectin glycoprotein ligand 1 by E-selectin signals activation of high-avidity beta2-integrin on neutrophils. J Immunol. 2004 Jun 15;172(12):7780-90. PubMed PMID: 15187162.

Green CE, Pearson DN, Christensen NB, Simon SI. Topographic requirements and dynamics of signaling via L-selectin on neutrophils. Am J Physiol Cell Physiol. 2003 Mar;284(3):C705-17. Epub 2002 Nov 13. PubMed PMID: 12431911.

Lum AF, Green CE, Lee GR, Staunton DE, Simon SI. Dynamic regulation of LFA-1 activation and neutrophil arrest on intercellular adhesion molecule 1 (ICAM-1) in shear flow. J Biol Chem. 2002 Jun 7;277(23):20660-70. Epub 2002 Apr 2. PubMed PMID: 11929876.

LAWRENCE JOH (2003 – 2004 NIH Fellow)
Joh LD, McDonald KA, VanderGheynst JS. Evaluating extraction and storage of a recombinant protein produced in agroinfiltrated lettuce. Biotechnol Prog. 2006 May-Jun;22(3):723-30. PubMed PMID: 16739955.

Joh LD, Wroblewski T, Ewing NN, VanderGheynst JS. High-level transient expression of recombinant protein in lettuce. Biotechnol Bioeng. 2005 Sep 30;91(7):861-71. PubMed PMID: 15937952.

SCOTT WONG (2003 – 2004 NIH Fellow)  PI: Kit Lam
No Publications

 

2002 – 2003 NIH FELLOWS’ PUBLICATIONS DURING PhD

MARISA WONG MEDINA (2002 – 2003 NIH Fellow)
Wong ML, Islas-Trejo A, Medrano JF. Structural characterization of the mouse high growth deletion and discovery of a novel fusion transcript between suppressor of cytokine signaling-2 (Socs-2) and viral encoded semaphorin receptor (Plexin C1). Gene. 2002 Oct 16;299(1-2):153-63. PubMed PMID: 12459263.

Wong ML, Medrano JF. Real-time PCR for mRNA quantitation. Biotechniques. 2005 Jul;39(1):75-85. Review. PubMed PMID: 16060372.

See publications for Chad Green in 2003-04 year

See publications for Craig Blanchette in 2003-04 year

 

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